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Sample GSM1500917 Query DataSets for GSM1500917
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a11592
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a11592
Sex: female
dna.extraction.method: AllPrep
age: 75
dnamage: 68.51157207
ageaccelerationresidualbasedontrainingandtestdata: 3.827162706
bmi: 31.9
diseasestatus: HealthyObese
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: 2.963428451
dnamageadjustedagebmigender: 4.785998983
smokingstatus: occasionally
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.296541
cg00000108 0.5065988
cg00000109 0.7801764
cg00000165 0.1967515
cg00000236 0.7775204
cg00000289 0.6614212
cg00000292 0.6348197
cg00000321 0.2574965
cg00000363 0.6085467
cg00000622 0.02259213
cg00000658 0.7833782
cg00000714 0.1740181
cg00000721 0.9154631
cg00000734 0.07975207
cg00000769 0.08316969
cg00000807 0.6616082
cg00000884 0.7821218
cg00000905 0.08185951
cg00000924 0.4760115
cg00000948 0.8340365

Total number of rows: 485577

Table truncated, full table size 10013 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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