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Sample GSM1500916 Query DataSets for GSM1500916
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a114f2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a114f2
Sex: male
dna.extraction.method: AllPrep
age: 54
dnamage: 52.36389786
ageaccelerationresidualbasedontrainingandtestdata: -0.546860915
bmi: 49.2
diseasestatus: PSC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: 0.5
nas.ballooning: NA
dnamageadjustedagebmi: -2.861422614
dnamageadjustedagebmigender: -5.114568883
smokingstatus: no
smokingpackyears: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2510636
cg00000108 0.453632
cg00000109 0.8103158
cg00000165 0.1446777
cg00000236 0.7968008
cg00000289 0.5778418
cg00000292 0.6633546
cg00000321 0.2199666
cg00000363 0.652429
cg00000622 0.02484266
cg00000658 0.7987266
cg00000714 0.1430245
cg00000721 0.8884048
cg00000734 0.08378578
cg00000769 0.06948406
cg00000807 0.6716633
cg00000884 0.8209578
cg00000905 0.07581564
cg00000924 0.4699144
cg00000948 0.867074

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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