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Sample GSM1500915 Query DataSets for GSM1500915
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a11452
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a11452
Sex: female
dna.extraction.method: AllPrep
age: 78
dnamage: 64.31883743
ageaccelerationresidualbasedontrainingandtestdata: -2.047522012
bmi: 23.4
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -1.691855933
dnamageadjustedagebmigender: 0.134314072
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2884487
cg00000108 0.4611997
cg00000109 0.8494977
cg00000165 0.1927853
cg00000236 0.7930578
cg00000289 0.6683978
cg00000292 0.6815574
cg00000321 0.244184
cg00000363 0.6049499
cg00000622 0.02331984
cg00000658 0.7784109
cg00000714 0.2115433
cg00000721 0.9116
cg00000734 0.07628728
cg00000769 0.0682578
cg00000807 0.7003614
cg00000884 0.7902432
cg00000905 0.07982814
cg00000924 0.5226677
cg00000948 0.8349187

Total number of rows: 485577

Table truncated, full table size 10013 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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