GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1500913 Query DataSets for GSM1500913
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a11342
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a11342
Sex: male
dna.extraction.method: AllPrep
age: 86
dnamage: 68.19105781
ageaccelerationresidualbasedontrainingandtestdata: -2.660501865
bmi: 20.9
diseasestatus: Control
nafldactivityscore: 1
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -2.438891302
dnamageadjustedagebmigender: -4.628269558
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3046855
cg00000108 0.4125684
cg00000109 0.840857
cg00000165 0.2010581
cg00000236 0.8137251
cg00000289 0.603907
cg00000292 0.7079569
cg00000321 0.252209
cg00000363 0.611472
cg00000622 0.01179544
cg00000658 0.7778478
cg00000714 0.1516492
cg00000721 0.9070542
cg00000734 0.07381346
cg00000769 0.07044581
cg00000807 0.7135682
cg00000884 0.829857
cg00000905 0.07854187
cg00000924 0.4728809
cg00000948 0.8662139

Total number of rows: 485577

Table truncated, full table size 10039 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap