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Sample GSM1500912 Query DataSets for GSM1500912
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a112b2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a112b2
Sex: male
dna.extraction.method: AllPrep
age: 68
dnamage: 61.3552897
ageaccelerationresidualbasedontrainingandtestdata: 0.595430537
bmi: 27.8
diseasestatus: PBC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: 1
nas.ballooning: NA
dnamageadjustedagebmi: 0.904605751
dnamageadjustedagebmigender: -1.324311256
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.4039605
cg00000108 0.5663484
cg00000109 0.8298347
cg00000165 0.2043168
cg00000236 0.8197735
cg00000289 0.6309491
cg00000292 0.7137153
cg00000321 0.3034702
cg00000363 0.585327
cg00000622 0.009749071
cg00000658 0.7846334
cg00000714 0.1936103
cg00000721 0.9296999
cg00000734 0.07970263
cg00000769 0.07418487
cg00000807 0.6662099
cg00000884 0.8278386
cg00000905 0.107577
cg00000924 0.5017977
cg00000948 0.8283309

Total number of rows: 485577

Table truncated, full table size 10023 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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