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Sample GSM1500911 Query DataSets for GSM1500911
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a10f02
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a10f02
Sex: female
dna.extraction.method: AllPrep
age: 73
dnamage: 66.61798077
ageaccelerationresidualbasedontrainingandtestdata: 3.054871463
bmi: 23.5
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: 3.73986195
dnamageadjustedagebmigender: 5.554309865
smokingstatus: no
smokingpackyears: 24.5
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3195632
cg00000108 0.425662
cg00000109 0.8524758
cg00000165 0.2089836
cg00000236 0.8072043
cg00000289 0.6181973
cg00000292 0.655789
cg00000321 0.2706035
cg00000363 0.6185055
cg00000622 0.03347198
cg00000658 0.7839607
cg00000714 0.1776534
cg00000721 0.8787202
cg00000734 0.08950806
cg00000769 0.09438489
cg00000807 0.7059426
cg00000884 0.7870438
cg00000905 0.09564975
cg00000924 0.4958974
cg00000948 0.8568445

Total number of rows: 485577

Table truncated, full table size 10009 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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