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Sample GSM1500910 Query DataSets for GSM1500910
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a10bf2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a10bf2
Sex: female
dna.extraction.method: AllPrep
age: 76
dnamage: 58.41061661
ageaccelerationresidualbasedontrainingandtestdata: -6.83444278
bmi: 25.3
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -6.659323082
dnamageadjustedagebmigender: -4.83708518
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2913478
cg00000108 0.4670052
cg00000109 0.8260416
cg00000165 0.2242879
cg00000236 0.7988387
cg00000289 0.4722813
cg00000292 0.7004086
cg00000321 0.2259477
cg00000363 0.6012561
cg00000622 0.03205497
cg00000658 0.7489725
cg00000714 0.1875327
cg00000721 0.8944521
cg00000734 0.09914853
cg00000769 0.08750146
cg00000807 0.6646397
cg00000884 0.7720307
cg00000905 0.1054885
cg00000924 0.5238879
cg00000948 0.790297

Total number of rows: 485577

Table truncated, full table size 10005 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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