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Sample GSM1500909 Query DataSets for GSM1500909
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a10bc2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a10bc2
Sex: female
dna.extraction.method: AllPrep
age: 55
dnamage: 59.53363658
ageaccelerationresidualbasedontrainingandtestdata: 6.062227781
bmi: 29.2
diseasestatus: PBC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: 1
nas.ballooning: NA
dnamageadjustedagebmi: 7.0362514
dnamageadjustedagebmigender: 8.810672348
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.4320463
cg00000108 0.8337868
cg00000109 0.8133293
cg00000165 0.2018923
cg00000236 0.7796416
cg00000289 0.5921828
cg00000292 0.7707278
cg00000321 0.3486328
cg00000363 0.4330337
cg00000622 0.00394914
cg00000658 0.7508654
cg00000714 0.1648785
cg00000721 0.8912677
cg00000734 0.05805496
cg00000769 0.06773922
cg00000807 0.6385083
cg00000884 0.7939059
cg00000905 0.07972451
cg00000924 0.4560911
cg00000948 0.8138559

Total number of rows: 485577

Table truncated, full table size 10025 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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