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Sample GSM1500899 Query DataSets for GSM1500899
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a179d2
Sample type genomic
 
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a179d2
Sex: female
dna.extraction.method: AllPrep
age: 79
dnamage: 80.27686691
ageaccelerationresidual: 1.74286293304445
bmi: 26.9
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
 
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
ID_REF
VALUE Average Beta (no special processing)

Data table
ID_REF VALUE
cg00000029 0.2064589
cg00000108 0.8743646
cg00000109 0.6672025
cg00000165 0.2141706
cg00000236 0.7326832
cg00000289 0.6237386
cg00000292 0.5151973
cg00000321 0.2489166
cg00000363 0.2300295
cg00000622 0.02565126
cg00000658 0.7278039
cg00000714 0.1070785
cg00000721 0.8879812
cg00000734 0.07325583
cg00000769 0.05457004
cg00000807 0.7588624
cg00000884 0.8110031
cg00000905 0.07183578
cg00000924 0.4989978
cg00000948 0.8468719

Total number of rows: 485577

Table truncated, full table size 10050 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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