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Sample GSM1500896 Query DataSets for GSM1500896
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a16ec2
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a16ec2
Sex: female
dna.extraction.method: AllPrep
age: 71
dnamage: 68.86791259
ageaccelerationresidual: -3.54698699530066
bmi: 21.7
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2194082
cg00000108 0.8737946
cg00000109 0.7132653
cg00000165 0.1803641
cg00000236 0.7679146
cg00000289 0.6356565
cg00000292 0.5400789
cg00000321 0.2692611
cg00000363 0.1994998
cg00000622 0.02979646
cg00000658 0.7657163
cg00000714 0.1175233
cg00000721 0.8882945
cg00000734 0.07214107
cg00000769 0.04452203
cg00000807 0.7648636
cg00000884 0.8154624
cg00000905 0.06734447
cg00000924 0.5059473
cg00000948 0.8615425

Total number of rows: 485577

Table truncated, full table size 10047 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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