GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1500895 Query DataSets for GSM1500895
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a164e2
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a164e2
Sex: female
dna.extraction.method: AllPrep
age: 65
dnamage: 67.27055533
ageaccelerationresidual: -0.555015961559515
bmi: 60.2
diseasestatus: NASH
nafldactivityscore: 5
liversteatosis: 2
liverinflammation: 2
fibrosis: 1
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2658934
cg00000108 0.8680347
cg00000109 0.7104096
cg00000165 0.1520897
cg00000236 0.8011258
cg00000289 0.7627373
cg00000292 0.5663672
cg00000321 0.268324
cg00000363 0.2312522
cg00000622 0.02749745
cg00000658 0.7622244
cg00000714 0.1138982
cg00000721 0.8797911
cg00000734 0.07765757
cg00000769 0.05041641
cg00000807 0.7372426
cg00000884 0.7906027
cg00000905 0.07048109
cg00000924 0.4869313
cg00000948 0.8786123

Total number of rows: 485577

Table truncated, full table size 10048 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap