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Sample GSM1500894 Query DataSets for GSM1500894
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a162b2
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a162b2
Sex: male
dna.extraction.method: AllPrep
age: 43
dnamage: 51.06285709
ageaccelerationresidual: 0.0648228754913999
bmi: 59.3
diseasestatus: NASH
nafldactivityscore: 6
liversteatosis: NA
liverinflammation: NA
fibrosis: 2
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3094274
cg00000108 0.8677028
cg00000109 0.7602861
cg00000165 0.1519368
cg00000236 0.757014
cg00000289 0.6475443
cg00000292 0.5821674
cg00000321 0.2490908
cg00000363 0.2351977
cg00000622 0.02536904
cg00000658 0.7377242
cg00000714 0.1509447
cg00000721 0.8826694
cg00000734 0.07990252
cg00000769 0.05170975
cg00000807 0.6971464
cg00000884 0.7915076
cg00000905 0.07179037
cg00000924 0.4942676
cg00000948 0.8373107

Total number of rows: 485577

Table truncated, full table size 10048 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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