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Sample GSM1500893 Query DataSets for GSM1500893
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a15d72
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a15d72
Sex: female
dna.extraction.method: AllPrep
age: 36
dnamage: 37.99622636
ageaccelerationresidual: -7.64759151181058
bmi: 47.8
diseasestatus: NASH
nafldactivityscore: 5
liversteatosis: 3
liverinflammation: 1
fibrosis: 1
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3133479
cg00000108 0.9082668
cg00000109 0.7495125
cg00000165 0.1861645
cg00000236 0.7021263
cg00000289 0.5708552
cg00000292 0.5908499
cg00000321 0.2666004
cg00000363 0.2724098
cg00000622 0.02493281
cg00000658 0.7510015
cg00000714 0.1376194
cg00000721 0.8516525
cg00000734 0.07661937
cg00000769 0.04299098
cg00000807 0.7497383
cg00000884 0.7916797
cg00000905 0.08030021
cg00000924 0.4648271
cg00000948 0.8543611

Total number of rows: 485577

Table truncated, full table size 10045 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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