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Sample GSM1500891 Query DataSets for GSM1500891
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a15c82
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a15c82
Sex: male
dna.extraction.method: AllPrep
age: 64
dnamage: 70.31709602
ageaccelerationresidual: 3.25641277739734
bmi: 74.9
diseasestatus: NAFLD
nafldactivityscore: 4
liversteatosis: 2
liverinflammation: 1
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2500393
cg00000108 0.9071349
cg00000109 0.7522339
cg00000165 0.1312591
cg00000236 0.756241
cg00000289 0.6887887
cg00000292 0.5797026
cg00000321 0.3429822
cg00000363 0.2488103
cg00000622 0.02618251
cg00000658 0.7655703
cg00000714 0.1203086
cg00000721 0.8849627
cg00000734 0.08145743
cg00000769 0.06009511
cg00000807 0.7123324
cg00000884 0.7731608
cg00000905 0.07973947
cg00000924 0.5036945
cg00000948 0.8661975

Total number of rows: 485577

Table truncated, full table size 10042 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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