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Sample GSM1500890 Query DataSets for GSM1500890
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a15c62
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a15c62
Sex: male
dna.extraction.method: AllPrep
age: 32
dnamage: 45.49780615
ageaccelerationresidual: 2.91354047401686
bmi: 57.5
diseasestatus: NAFLD
nafldactivityscore: 4
liversteatosis: 3
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3336042
cg00000108 0.8946172
cg00000109 0.7391729
cg00000165 0.1488059
cg00000236 0.7474128
cg00000289 0.5690672
cg00000292 0.6522377
cg00000321 0.3007541
cg00000363 0.2419457
cg00000622 0.02181666
cg00000658 0.7271984
cg00000714 0.1410465
cg00000721 0.9031169
cg00000734 0.07807084
cg00000769 0.05617777
cg00000807 0.7143387
cg00000884 0.8256377
cg00000905 0.08433391
cg00000924 0.4510007
cg00000948 0.8312452

Total number of rows: 485577

Table truncated, full table size 10044 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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