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Sample GSM1500889 Query DataSets for GSM1500889
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a15b12
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a15b12
Sex: female
dna.extraction.method: AllPrep
age: 31
dnamage: 45.1843269
ageaccelerationresidual: 3.36494927297371
bmi: 54.1
diseasestatus: HealthyObese
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2558131
cg00000108 0.9066697
cg00000109 0.6762811
cg00000165 0.1591633
cg00000236 0.7449552
cg00000289 0.6306932
cg00000292 0.5934832
cg00000321 0.333966
cg00000363 0.2123515
cg00000622 0.01578035
cg00000658 0.7856857
cg00000714 0.1098642
cg00000721 0.8859043
cg00000734 0.07554582
cg00000769 0.04470439
cg00000807 0.7250027
cg00000884 0.82959
cg00000905 0.04847996
cg00000924 0.4340035
cg00000948 0.8391302

Total number of rows: 485577

Table truncated, full table size 10045 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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