GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1500887 Query DataSets for GSM1500887
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a15a62
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a15a62
Sex: female
dna.extraction.method: AllPrep
age: 33
dnamage: 43.72998341
ageaccelerationresidual: 0.380829685059997
bmi: 53.8
diseasestatus: NASH
nafldactivityscore: 7
liversteatosis: 3
liverinflammation: 3
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2338719
cg00000108 0.9159729
cg00000109 0.7287574
cg00000165 0.1602252
cg00000236 0.7972262
cg00000289 0.6593402
cg00000292 0.6414105
cg00000321 0.3303161
cg00000363 0.2155252
cg00000622 0.03169662
cg00000658 0.7686458
cg00000714 0.1253365
cg00000721 0.888612
cg00000734 0.06365081
cg00000769 0.03714466
cg00000807 0.7816042
cg00000884 0.7825573
cg00000905 0.07481244
cg00000924 0.522886
cg00000948 0.8746337

Total number of rows: 485577

Table truncated, full table size 10043 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap