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Sample GSM1500886 Query DataSets for GSM1500886
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a15972
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a15972
Sex: female
dna.extraction.method: AllPrep
age: 42
dnamage: 53.73099941
ageaccelerationresidual: 3.49785324444826
bmi: 70.2
diseasestatus: NASH
nafldactivityscore: 5
liversteatosis: 3
liverinflammation: 2
fibrosis: 3
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2207485
cg00000108 0.8983681
cg00000109 0.6872329
cg00000165 0.1566637
cg00000236 0.7622523
cg00000289 0.6158326
cg00000292 0.583429
cg00000321 0.335273
cg00000363 0.2318014
cg00000622 0.02169581
cg00000658 0.7579442
cg00000714 0.1205892
cg00000721 0.8755932
cg00000734 0.07611053
cg00000769 0.06208191
cg00000807 0.7191771
cg00000884 0.7893096
cg00000905 0.08459173
cg00000924 0.4748762
cg00000948 0.8625412

Total number of rows: 485577

Table truncated, full table size 10041 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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