GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1500884 Query DataSets for GSM1500884
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a15522
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a15522
Sex: male
dna.extraction.method: AllPrep
age: 59
dnamage: 66.67202104
ageaccelerationresidual: 3.43577804218165
bmi: 49.4
diseasestatus: NASH
nafldactivityscore: 8
liversteatosis: 3
liverinflammation: 2
fibrosis: 1
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3063468
cg00000108 0.9052218
cg00000109 0.7465373
cg00000165 0.1692275
cg00000236 0.7670483
cg00000289 0.6326454
cg00000292 0.5765656
cg00000321 0.2414262
cg00000363 0.2786842
cg00000622 0.03122996
cg00000658 0.7398817
cg00000714 0.1220879
cg00000721 0.8921809
cg00000734 0.07388266
cg00000769 0.0645194
cg00000807 0.7490916
cg00000884 0.7848743
cg00000905 0.07467233
cg00000924 0.4581193
cg00000948 0.8173112

Total number of rows: 485577

Table truncated, full table size 10052 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap