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Sample GSM1500883 Query DataSets for GSM1500883
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a154c2
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a154c2
Sex: female
dna.extraction.method: AllPrep
age: 32
dnamage: 41.39461086
ageaccelerationresidual: -1.18965481598315
bmi: 47.3
diseasestatus: NASH
nafldactivityscore: 5
liversteatosis: 3
liverinflammation: 1
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2708244
cg00000108 0.8855448
cg00000109 0.731463
cg00000165 0.2004699
cg00000236 0.7713535
cg00000289 0.6012319
cg00000292 0.5672567
cg00000321 0.2899679
cg00000363 0.2461436
cg00000622 0.02731626
cg00000658 0.7534518
cg00000714 0.1209992
cg00000721 0.875413
cg00000734 0.07272042
cg00000769 0.04787919
cg00000807 0.7116572
cg00000884 0.819084
cg00000905 0.07641503
cg00000924 0.460008
cg00000948 0.8455422

Total number of rows: 485577

Table truncated, full table size 10049 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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