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Sample GSM1500880 Query DataSets for GSM1500880
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a15152
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a15152
Sex: female
dna.extraction.method: AllPrep
age: 40
dnamage: 54.03047952
ageaccelerationresidual: 5.32710945236198
bmi: 45.9
diseasestatus: NAFLD
nafldactivityscore: 1
liversteatosis: 1
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2103437
cg00000108 0.87911
cg00000109 0.7157668
cg00000165 0.1667283
cg00000236 0.764682
cg00000289 0.5482771
cg00000292 0.582445
cg00000321 0.2780406
cg00000363 0.2346812
cg00000622 0.03147043
cg00000658 0.7717683
cg00000714 0.1261698
cg00000721 0.8686528
cg00000734 0.07963546
cg00000769 0.05399753
cg00000807 0.7596573
cg00000884 0.777949
cg00000905 0.08139073
cg00000924 0.6091605
cg00000948 0.8577327

Total number of rows: 485577

Table truncated, full table size 10042 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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