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Sample GSM1500878 Query DataSets for GSM1500878
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a14ee2
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a14ee2
Sex: male
dna.extraction.method: AllPrep
age: 44
dnamage: 55.91625441
ageaccelerationresidual: 4.15333214653454
bmi: 43.9
diseasestatus: HealthyObese
nafldactivityscore: 1
liversteatosis: 1
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2318567
cg00000108 0.8737849
cg00000109 0.694921
cg00000165 0.1578645
cg00000236 0.7393472
cg00000289 0.6364807
cg00000292 0.5259702
cg00000321 0.2420608
cg00000363 0.2118094
cg00000622 0.02487567
cg00000658 0.7569721
cg00000714 0.109955
cg00000721 0.8781821
cg00000734 0.07475026
cg00000769 0.03823373
cg00000807 0.7732394
cg00000884 0.8263082
cg00000905 0.07197996
cg00000924 0.4741744
cg00000948 0.8486819

Total number of rows: 485577

Table truncated, full table size 10056 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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