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Sample GSM1500876 Query DataSets for GSM1500876
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a14d82
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a14d82
Sex: female
dna.extraction.method: AllPrep
age: 51
dnamage: 50.46239403
ageaccelerationresidual: -6.65474457616348
bmi: 41.8
diseasestatus: NASH
nafldactivityscore: 6
liversteatosis: 3
liverinflammation: 3
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2792307
cg00000108 0.8811519
cg00000109 0.6990129
cg00000165 0.1627287
cg00000236 0.7395111
cg00000289 0.6020883
cg00000292 0.5924348
cg00000321 0.2377362
cg00000363 0.2492156
cg00000622 0.01863213
cg00000658 0.7616968
cg00000714 0.110204
cg00000721 0.9020259
cg00000734 0.07180918
cg00000769 0.04281407
cg00000807 0.7366158
cg00000884 0.7826618
cg00000905 0.0661251
cg00000924 0.5125747
cg00000948 0.8302237

Total number of rows: 485577

Table truncated, full table size 10053 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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