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Sample GSM1500875 Query DataSets for GSM1500875
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a14cf2
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a14cf2
Sex: female
dna.extraction.method: AllPrep
age: 46
dnamage: 46.01024058
ageaccelerationresidual: -7.28245778137918
bmi: 43.5
diseasestatus: NAFLD
nafldactivityscore: 3
liversteatosis: 3
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3237891
cg00000108 0.8422899
cg00000109 0.7917328
cg00000165 0.1108367
cg00000236 0.6867207
cg00000289 0.5802232
cg00000292 0.6595533
cg00000321 0.2386548
cg00000363 0.306884
cg00000622 0.0233731
cg00000658 0.7579524
cg00000714 0.1466445
cg00000721 0.88498
cg00000734 0.07246604
cg00000769 0.03930076
cg00000807 0.7593822
cg00000884 0.7648757
cg00000905 0.06281361
cg00000924 0.490462
cg00000948 0.8480358

Total number of rows: 485577

Table truncated, full table size 10047 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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