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Sample GSM1500874 Query DataSets for GSM1500874
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a14be2
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a14be2
Sex: female
dna.extraction.method: AllPrep
age: 44
dnamage: 49.2443155
ageaccelerationresidual: -2.51860676346546
bmi: 48
diseasestatus: HealthyObese
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2144086
cg00000108 0.85474
cg00000109 0.7207235
cg00000165 0.1269578
cg00000236 0.7033826
cg00000289 0.5725175
cg00000292 0.5353498
cg00000321 0.192245
cg00000363 0.1771439
cg00000622 0.0280909
cg00000658 0.778287
cg00000714 0.1000316
cg00000721 0.8895815
cg00000734 0.06255744
cg00000769 0.04809307
cg00000807 0.7276095
cg00000884 0.8066773
cg00000905 0.08380354
cg00000924 0.4864474
cg00000948 0.815378

Total number of rows: 485577

Table truncated, full table size 10056 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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