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Sample GSM1500870 Query DataSets for GSM1500870
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a14772
Sample type genomic
 
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a14772
Sex: male
dna.extraction.method: AllPrep
age: 57
dnamage: 60.02735533
ageaccelerationresidual: -1.67911156990463
bmi: 46.6
diseasestatus: HealthyObese
nafldactivityscore: 1
liversteatosis: 1
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
 
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
ID_REF
VALUE Average Beta (no special processing)

Data table
ID_REF VALUE
cg00000029 0.2173466
cg00000108 0.8879388
cg00000109 0.7139161
cg00000165 0.1431158
cg00000236 0.7202544
cg00000289 0.6752634
cg00000292 0.5812319
cg00000321 0.232177
cg00000363 0.1926945
cg00000622 0.01889206
cg00000658 0.7686579
cg00000714 0.1107124
cg00000721 0.8785007
cg00000734 0.08649524
cg00000769 0.04055938
cg00000807 0.7514994
cg00000884 0.7982324
cg00000905 0.07049157
cg00000924 0.5462837
cg00000948 0.8227167

Total number of rows: 485577

Table truncated, full table size 10056 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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