|
| Status |
Public on Sep 06, 2014 |
| Title |
genomic DNA from OGA27 |
| Sample type |
genomic |
| |
|
| Source name |
OGA27
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Male
tissue: oligodendroglial tumor
diagnosis: AOD
1p/19q status: Loss
idh status: MUT
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from samples using phenol-cloroform based methods according to standard conditions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
tumor
|
| Data processing |
BeadStudio software v3.2, Raw data are available in IDAT files on each sample record and on series record in the file: Unmethylated_and_methylated_signal_intensities.txt
|
| |
|
| Submission date |
Sep 05, 2014 |
| Last update date |
Sep 06, 2014 |
| Contact name |
Barbara Melendez |
| E-mail(s) |
bmelendez@sescam.jccm.es
|
| Phone |
34 925 269 245
|
| Organization name |
HOSPITAL VIRGEN DE LA SALUD
|
| Department |
UNIDAD DE INVESTIGACION DE PATOLOGIA MOLECULAR
|
| Lab |
GRUPO DE ESTUDIO DE TUMORES DEL SISTEMA NERVIOSO CENTRAL
|
| Street address |
AVDA. BARBER 30
|
| City |
TOLEDO |
| ZIP/Postal code |
45004 |
| Country |
Spain |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE61160 |
Codeletion of 1p and 19q Determines Distinct Gene Methylation and Expression Profiles in IDH-mutated Oligodendroglial Tumors |
|
