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Sample GSM1498758 Query DataSets for GSM1498758
Status Public on Sep 06, 2014
Title genomic DNA from OAA46
Sample type genomic
 
Source name OAA46
Organism Homo sapiens
Characteristics gender: Male
tissue: oligodendroglial tumor
diagnosis: AOA
1p/19q status: Intact
idh status: WT
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from samples using phenol-cloroform based methods according to standard conditions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description tumor
Data processing BeadStudio software v3.2, Raw data are available in IDAT files on each sample record and on series record in the file: Unmethylated_and_methylated_signal_intensities.txt
 
Submission date Sep 05, 2014
Last update date Sep 06, 2014
Contact name Barbara Melendez
E-mail(s) bmelendez@sescam.jccm.es
Phone 34 925 269 245
Organization name HOSPITAL VIRGEN DE LA SALUD
Department UNIDAD DE INVESTIGACION DE PATOLOGIA MOLECULAR
Lab GRUPO DE ESTUDIO DE TUMORES DEL SISTEMA NERVIOSO CENTRAL
Street address AVDA. BARBER 30
City TOLEDO
ZIP/Postal code 45004
Country Spain
 
Platform ID GPL13534
Series (1)
GSE61160 Codeletion of 1p and 19q Determines Distinct Gene Methylation and Expression Profiles in IDH-mutated Oligodendroglial Tumors

Data table header descriptions
ID_REF
VALUE Average Beta
SAMPLE 24.Detection Pval

Data table
ID_REF VALUE SAMPLE 24.Detection Pval
cg00000029 0.400711 0
cg00000108 0.9126331 0
cg00000109 0.8348903 0
cg00000165 0.5537056 0
cg00000236 0.8468022 0
cg00000289 0.6797546 0
cg00000292 0.6793973 0
cg00000321 0.671231 0
cg00000363 0.3700292 0
cg00000622 0.004803258 0
cg00000658 0.8370838 0
cg00000714 0.1078528 0
cg00000721 0.9662601 0
cg00000734 0.07310401 0
cg00000769 0.04830703 0
cg00000807 0.8201421 0
cg00000884 0.8710665 0
cg00000905 0.06318177 0
cg00000924 0.3942138 0
cg00000948 0.8996437 0

Total number of rows: 485577

Table truncated, full table size 10942 Kbytes.




Supplementary file Size Download File type/resource
GSM1498758_5831559018_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1498758_5831559018_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table
Processed data are available on Series record

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