|
Status |
Public on Sep 06, 2014 |
Title |
genomic DNA from OG3 |
Sample type |
genomic |
|
|
Source name |
OG3
|
Organism |
Homo sapiens |
Characteristics |
gender: Female tissue: oligodendroglial tumor diagnosis: OD 1p/19q status: Loss idh status: MUT
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted and purified from samples using phenol-cloroform based methods according to standard conditions
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
tumor
|
Data processing |
BeadStudio software v3.2, Raw data are available in IDAT files on each sample record and on series record in the file: Unmethylated_and_methylated_signal_intensities.txt
|
|
|
Submission date |
Sep 05, 2014 |
Last update date |
Sep 06, 2014 |
Contact name |
Barbara Melendez |
E-mail(s) |
bmelendez@sescam.jccm.es
|
Phone |
34 925 269 245
|
Organization name |
HOSPITAL VIRGEN DE LA SALUD
|
Department |
UNIDAD DE INVESTIGACION DE PATOLOGIA MOLECULAR
|
Lab |
GRUPO DE ESTUDIO DE TUMORES DEL SISTEMA NERVIOSO CENTRAL
|
Street address |
AVDA. BARBER 30
|
City |
TOLEDO |
ZIP/Postal code |
45004 |
Country |
Spain |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE61160 |
Codeletion of 1p and 19q Determines Distinct Gene Methylation and Expression Profiles in IDH-mutated Oligodendroglial Tumors |
|