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Sample GSM1495935 Query DataSets for GSM1495935
Status Public on Nov 01, 2014
Title CP151-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: atypical choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP151-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.823856618
cg00000108 0.988530571
cg00000109 0.923167574
cg00000165 0.236285759
cg00000236 0.939353453
cg00000289 0.689550217
cg00000292 0.872043833
cg00000321 0.22928843
cg00000363 0.073560791
cg00000622 0.01933098
cg00000658 0.863900204
cg00000714 0.046066335
cg00000721 0.977755091
cg00000734 0.056645248
cg00000769 0.076423468
cg00000807 0.96248519
cg00000884 0.945431425
cg00000905 0.069719415
cg00000924 0.715194238
cg00000948 0.958451414

Total number of rows: 483949

Table truncated, full table size 10828 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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