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Sample GSM1495934 Query DataSets for GSM1495934
Status Public on Nov 01, 2014
Title CP107-TA
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: mut
tumor type: choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP107-TA
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.810889002
cg00000108 0.989819208
cg00000109 0.860958463
cg00000165 0.217922575
cg00000236 0.920214551
cg00000289 0.575514153
cg00000292 0.967706462
cg00000321 0.171277262
cg00000363 0.173270001
cg00000622 0.024634276
cg00000658 0.935452367
cg00000714 0.063364199
cg00000721 0.976538194
cg00000734 0.05594647
cg00000769 0.063895542
cg00000807 0.933473326
cg00000884 0.937393564
cg00000905 0.10059758
cg00000924 0.702992055
cg00000948 0.962216562

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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