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Sample GSM1495933 Query DataSets for GSM1495933
Status Public on Nov 01, 2014
Title CP136-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: atypical choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP136-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.574511511
cg00000108 0.984250552
cg00000109 0.941772534
cg00000165 0.535954365
cg00000236 0.940588429
cg00000289 0.58600418
cg00000292 0.948884798
cg00000321 0.402141622
cg00000363 0.066857698
cg00000622 0.015991177
cg00000658 0.898337313
cg00000714 0.041201806
cg00000721 0.988182573
cg00000734 0.045563868
cg00000769 0.076216131
cg00000807 0.964686884
cg00000884 0.953090136
cg00000905 0.066510166
cg00000924 0.745488255
cg00000948 0.970840708

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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