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Sample GSM1495931 Query DataSets for GSM1495931
Status Public on Nov 01, 2014
Title CP62-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP62-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.489355065
cg00000108 0.984953036
cg00000109 0.953792996
cg00000165 0.631022974
cg00000236 0.938149912
cg00000289 0.659771018
cg00000292 0.911301247
cg00000321 0.543665689
cg00000363 0.113236934
cg00000622 0.020281189
cg00000658 0.927032294
cg00000714 0.109918723
cg00000721 0.973526784
cg00000734 0.042946549
cg00000769 0.076311728
cg00000807 0.93824483
cg00000884 0.95443445
cg00000905 0.076130361
cg00000924 0.497709363
cg00000948 0.971423948

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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