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Sample GSM1495930 Query DataSets for GSM1495930
Status Public on Nov 01, 2014
Title CP3-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: mut
tumor type: choroid plexus carcinomas
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP3-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.390602767
cg00000108 0.989047384
cg00000109 0.967710971
cg00000165 0.154083333
cg00000236 0.95779608
cg00000289 0.682822712
cg00000292 0.728512134
cg00000321 0.620215769
cg00000363 0.373219278
cg00000622 0.020418887
cg00000658 0.916955596
cg00000714 0.067580585
cg00000721 0.973886301
cg00000734 0.082205949
cg00000769 0.061700527
cg00000807 0.953256186
cg00000884 0.889570455
cg00000905 0.046390505
cg00000924 0.40967492
cg00000948 0.966797973

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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