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Sample GSM1495929 Query DataSets for GSM1495929
Status Public on Nov 01, 2014
Title CP57-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP57-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.813118574
cg00000108 0.980922216
cg00000109 0.944785201
cg00000165 0.618512207
cg00000236 0.940473282
cg00000289 0.557243934
cg00000292 0.936440609
cg00000321 0.572537081
cg00000363 0.062584346
cg00000622 0.025019305
cg00000658 0.916698973
cg00000714 0.057913307
cg00000721 0.991281463
cg00000734 0.060894828
cg00000769 0.073092578
cg00000807 0.913222597
cg00000884 0.924500212
cg00000905 0.078946617
cg00000924 0.528179401
cg00000948 0.966460077

Total number of rows: 483949

Table truncated, full table size 10828 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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