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Sample GSM1495928 Query DataSets for GSM1495928
Status Public on Nov 01, 2014
Title CP153-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus carcinomas
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP153-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.81259739
cg00000108 0.948965938
cg00000109 0.943526821
cg00000165 0.739106647
cg00000236 0.928630766
cg00000289 0.723852159
cg00000292 0.874462803
cg00000321 0.536437842
cg00000363 0.144773881
cg00000622 0.01726062
cg00000658 0.919797122
cg00000714 0.069840586
cg00000721 0.982676188
cg00000734 0.062837963
cg00000769 0.073295628
cg00000807 0.80764922
cg00000884 0.950036017
cg00000905 0.038366761
cg00000924 0.557672283
cg00000948 0.978342684

Total number of rows: 483949

Table truncated, full table size 10828 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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