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Sample GSM1495927 Query DataSets for GSM1495927
Status Public on Nov 01, 2014
Title CP114-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP114-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.794530111
cg00000108 0.991095563
cg00000109 0.933399161
cg00000165 0.85536224
cg00000236 0.943700935
cg00000289 0.494362464
cg00000292 0.971543327
cg00000321 0.873044532
cg00000363 0.092292269
cg00000622 0.020134228
cg00000658 0.860779423
cg00000714 0.042289387
cg00000721 0.972089686
cg00000734 0.057192819
cg00000769 0.063947492
cg00000807 0.961844456
cg00000884 0.894068755
cg00000905 0.059631783
cg00000924 0.621657727
cg00000948 0.968824947

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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