|
Status |
Public on Nov 01, 2014 |
Title |
CP114-T |
Sample type |
genomic |
|
|
Source name |
brain tumor
|
Organism |
Homo sapiens |
Characteristics |
p53 status: wt tumor type: choroid plexus papilloma
|
Treatment protocol |
Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
|
Growth protocol |
DNA was isolated from fresh-frozen tumor soon after tumor resection
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
|
Label |
biotin
|
Label protocol |
Standard Illumina protocol (Biotin/DNP)
|
|
|
Hybridization protocol |
standard Illumina protocol
|
Scan protocol |
Illumina iScan System according to the manufacturer's protocol.
|
Description |
CP114-T
|
Data processing |
Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
|
|
|
Submission date |
Sep 03, 2014 |
Last update date |
Nov 01, 2014 |
Contact name |
Diana M Merino |
E-mail(s) |
diana.merino@utoronto.ca
|
Organization name |
The Hospital for Sick Children
|
Department |
Genetics and Genome Biology
|
Lab |
Malkin
|
Street address |
686 Bay St.
|
City |
Toronto |
State/province |
Ontario |
ZIP/Postal code |
M5V0A4 |
Country |
Canada |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE61044 |
Methylation analysis of choroid plexus tumors |
|