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Sample GSM1495924 Query DataSets for GSM1495924
Status Public on Nov 01, 2014
Title CP140-TB
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus carcinomas
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP140-TB
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.156484876
cg00000108 0.989505732
cg00000109 0.839620008
cg00000165 0.926514364
cg00000236 0.945077189
cg00000289 0.535511264
cg00000292 0.493262149
cg00000321 0.860621197
cg00000363 0.118106073
cg00000622 0.014827018
cg00000658 0.919783716
cg00000714 0.051626203
cg00000721 0.984639223
cg00000734 0.043464601
cg00000769 0.073654102
cg00000807 0.897522893
cg00000884 0.93059915
cg00000905 0.050373452
cg00000924 0.244318415
cg00000948 0.968135463

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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