GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1495923 Query DataSets for GSM1495923
Status Public on Nov 01, 2014
Title CP159-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: atypical choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP159-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.393197978
cg00000108 0.981505343
cg00000109 0.95428537
cg00000165 0.92394033
cg00000236 0.921121746
cg00000289 0.565834641
cg00000292 0.967238532
cg00000321 0.848170327
cg00000363 0.087080431
cg00000622 0.027531561
cg00000658 0.916653451
cg00000714 0.04977813
cg00000721 0.968988762
cg00000734 0.081899386
cg00000769 0.071758043
cg00000807 0.931151952
cg00000884 0.93757186
cg00000905 0.077067961
cg00000924 0.610481276
cg00000948 0.961855575

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap