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Sample GSM1495922 Query DataSets for GSM1495922
Status Public on Nov 01, 2014
Title CP119-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP119-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.810243858
cg00000108 0.976438691
cg00000109 0.914439118
cg00000165 0.415494378
cg00000236 0.927369809
cg00000289 0.668162762
cg00000292 0.918612376
cg00000321 0.35124421
cg00000363 0.074325433
cg00000622 0.021862176
cg00000658 0.903819712
cg00000714 0.049776809
cg00000721 0.977952556
cg00000734 0.065825599
cg00000769 0.068335419
cg00000807 0.97446046
cg00000884 0.938312579
cg00000905 0.056146641
cg00000924 0.673293247
cg00000948 0.978648897

Total number of rows: 483949

Table truncated, full table size 10828 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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