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Sample GSM1495921 Query DataSets for GSM1495921
Status Public on Nov 01, 2014
Title CP55-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: atypical choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP55-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.579354749
cg00000108 0.985677754
cg00000109 0.944848496
cg00000165 0.261143606
cg00000236 0.985253513
cg00000289 0.560385715
cg00000292 0.828104145
cg00000321 0.553719562
cg00000363 0.092870388
cg00000622 0.018393815
cg00000658 0.9116368
cg00000714 0.061318228
cg00000721 0.966379644
cg00000734 0.059597029
cg00000769 0.069297339
cg00000807 0.94848901
cg00000884 0.933438497
cg00000905 0.044929882
cg00000924 0.5348389
cg00000948 0.974485796

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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