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Sample GSM1495920 Query DataSets for GSM1495920
Status Public on Nov 01, 2014
Title CP115-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: mut
tumor type: choroid plexus carcinomas
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP115-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.086164916
cg00000108 0.971263822
cg00000109 0.926351712
cg00000165 0.965490863
cg00000236 0.930858213
cg00000289 0.57292837
cg00000292 0.526516242
cg00000321 0.872353812
cg00000363 0.151631317
cg00000622 0.019675578
cg00000658 0.901397642
cg00000714 0.050056677
cg00000721 0.926526783
cg00000734 0.072131819
cg00000769 0.071521618
cg00000807 0.944165456
cg00000884 0.943484942
cg00000905 0.074730777
cg00000924 0.17466958
cg00000948 0.962735167

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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