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Sample GSM1495919 Query DataSets for GSM1495919
Status Public on Nov 01, 2014
Title CP108-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP108-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.292808941
cg00000108 0.978196657
cg00000109 0.947227994
cg00000165 0.416282274
cg00000236 0.926990114
cg00000289 0.474420193
cg00000292 0.871231521
cg00000321 0.486875385
cg00000363 0.165428717
cg00000622 0.019250713
cg00000658 0.892672703
cg00000714 0.054874605
cg00000721 0.972889525
cg00000734 0.067048756
cg00000769 0.073797735
cg00000807 0.918706945
cg00000884 0.870125224
cg00000905 0.079667081
cg00000924 0.66987638
cg00000948 0.979547402

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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