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Sample GSM1495918 Query DataSets for GSM1495918
Status Public on Nov 01, 2014
Title CP139-TB
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus carcinomas
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP139-TB
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.421798695
cg00000108 0.978501698
cg00000109 0.951258713
cg00000165 0.351811168
cg00000236 0.9248627
cg00000289 0.677668405
cg00000292 0.638256934
cg00000321 0.426437969
cg00000363 0.226600991
cg00000622 0.018347309
cg00000658 0.939106423
cg00000714 0.105189946
cg00000721 0.978125926
cg00000734 0.047002886
cg00000769 0.081484735
cg00000807 0.811115229
cg00000884 0.857361418
cg00000905 0.053399928
cg00000924 0.553643905
cg00000948 0.9822258

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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