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Sample GSM1495917 Query DataSets for GSM1495917
Status Public on Nov 01, 2014
Title CP110-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP110-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.832270534
cg00000108 0.982887964
cg00000109 0.577757985
cg00000165 0.172451054
cg00000236 0.873346743
cg00000289 0.41420511
cg00000292 0.778208635
cg00000321 0.091247031
cg00000363 0.088672278
cg00000622 0.023361454
cg00000658 0.869716337
cg00000714 0.053729775
cg00000721 0.941633502
cg00000734 0.080482401
cg00000769 0.076561451
cg00000807 0.876500939
cg00000884 0.89509777
cg00000905 0.081709613
cg00000924 0.683657487
cg00000948 0.929709148

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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