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Sample GSM1495915 Query DataSets for GSM1495915
Status Public on Nov 01, 2014
Title CP106-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP106-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.325175758
cg00000108 0.972769766
cg00000109 0.938218033
cg00000165 0.818495692
cg00000236 0.897819929
cg00000289 0.544679004
cg00000292 0.930180196
cg00000321 0.346003137
cg00000363 0.131668003
cg00000622 0.026795557
cg00000658 0.874984609
cg00000714 0.068071258
cg00000721 0.998120052
cg00000734 0.051316647
cg00000769 0.076306914
cg00000807 0.904094471
cg00000884 0.953760976
cg00000905 0.071576415
cg00000924 0.686554052
cg00000948 0.959528289

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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