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Sample GSM1495914 Query DataSets for GSM1495914
Status Public on Nov 01, 2014
Title CP66-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus carcinomas
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP66-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.208187937
cg00000108 0.957870474
cg00000109 0.939242665
cg00000165 0.84774155
cg00000236 0.93358022
cg00000289 0.628392622
cg00000292 0.627474928
cg00000321 0.805352259
cg00000363 0.148917815
cg00000622 0.024055262
cg00000658 0.913456662
cg00000714 0.104134769
cg00000721 0.952959907
cg00000734 0.055065184
cg00000769 0.069663992
cg00000807 0.892903632
cg00000884 0.593860482
cg00000905 0.064247284
cg00000924 0.419041527
cg00000948 0.974147244

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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