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Sample GSM1495913 Query DataSets for GSM1495913
Status Public on Nov 01, 2014
Title CP133-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP133-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.715011042
cg00000108 0.983976851
cg00000109 0.936322824
cg00000165 0.778825638
cg00000236 0.950167168
cg00000289 0.656174804
cg00000292 0.950960485
cg00000321 0.810038481
cg00000363 0.164261026
cg00000622 0.023470111
cg00000658 0.874843853
cg00000714 0.05743747
cg00000721 0.979763469
cg00000734 0.065746576
cg00000769 0.085369691
cg00000807 0.947234662
cg00000884 0.901403427
cg00000905 0.06576918
cg00000924 0.916371357
cg00000948 0.967980886

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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