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Sample GSM1495912 Query DataSets for GSM1495912
Status Public on Nov 01, 2014
Title CP146-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus carcinomas
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP146-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.633721264
cg00000108 0.98590901
cg00000109 0.917135055
cg00000165 0.940581644
cg00000236 0.951722336
cg00000289 0.586244474
cg00000292 0.926972035
cg00000321 0.77823551
cg00000363 0.088743861
cg00000622 0.030402245
cg00000658 0.879884943
cg00000714 0.050390874
cg00000721 0.976410528
cg00000734 0.049853284
cg00000769 0.088871177
cg00000807 0.923322588
cg00000884 0.945052258
cg00000905 0.059067101
cg00000924 0.669852861
cg00000948 0.970805491

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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