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Sample GSM1495911 Query DataSets for GSM1495911
Status Public on Nov 01, 2014
Title CP138-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: atypical choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP138-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.636278175
cg00000108 0.985833141
cg00000109 0.868362377
cg00000165 0.276844206
cg00000236 0.933928547
cg00000289 0.633794628
cg00000292 0.947147503
cg00000321 0.420910143
cg00000363 0.211586809
cg00000622 0.023055946
cg00000658 0.924207848
cg00000714 0.078284394
cg00000721 0.992906855
cg00000734 0.047649957
cg00000769 0.062576604
cg00000807 0.964651329
cg00000884 0.937118368
cg00000905 0.061377821
cg00000924 0.706619426
cg00000948 0.956601838

Total number of rows: 483949

Table truncated, full table size 10828 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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